User contributions
Jump to navigation
Jump to search
- 15:16, 26 February 2024 diff hist -22 Using the Diagram View →Quick Reference current
- 15:16, 26 February 2024 diff hist +440 Using the Diagram View →Quick Reference
- 15:10, 26 February 2024 diff hist +249 Using the Diagram View →Quick Reference
- 15:06, 26 February 2024 diff hist 0 Using the Diagram View →Quick Reference
- 15:06, 26 February 2024 diff hist +73 Using the Diagram View →Quick Reference
- 15:04, 26 February 2024 diff hist +9 Using the Diagram View →Quick Reference
- 15:04, 26 February 2024 diff hist +338 Using the Diagram View →Quick Reference
- 15:00, 26 February 2024 diff hist +38 Using the Diagram View →Quick Reference
- 14:59, 26 February 2024 diff hist +161 Using the Diagram View →Quick Reference
- 14:56, 26 February 2024 diff hist +22 Using the Diagram View →Quick Reference
- 14:56, 26 February 2024 diff hist +187 Using the Diagram View
- 12:41, 4 January 2024 diff hist +228 Using the Diagram View →Features and Future Direction
- 12:40, 4 January 2024 diff hist +38 Using the Diagram View →Features and Future Direction
- 12:40, 4 January 2024 diff hist +145 Using the Diagram View →Features and Future Direction
- 12:40, 4 January 2024 diff hist +17 Using the Diagram View →Features and Future Direction
- 12:39, 4 January 2024 diff hist +1 Using the Diagram View →Features and Future Direction
- 12:39, 4 January 2024 diff hist +17 Using the Diagram View →Features and Future Direction
- 12:37, 4 January 2024 diff hist +3 Using the Diagram View →Features and Future Direction
- 12:36, 4 January 2024 diff hist +774 Using the Diagram View →Features and Future Direction
- 12:26, 4 January 2024 diff hist +35 Using the Diagram View
- 14:55, 23 December 2023 diff hist +104 Using the Diagram View
- 14:54, 23 December 2023 diff hist +547 Using the Diagram View
- 14:49, 23 December 2023 diff hist +10 Using the Diagram View →Moving Objects
- 14:48, 23 December 2023 diff hist +20 Using the Diagram View
- 14:47, 23 December 2023 diff hist +192 Using the Diagram View
- 14:45, 23 December 2023 diff hist +1,303 Using the Diagram View
- 14:19, 23 December 2023 diff hist +1,621 Using the Diagram View
- 13:39, 2 October 2023 diff hist +50 Using the Diagram View
- 13:38, 2 October 2023 diff hist +14 Using the Diagram View
- 13:37, 2 October 2023 diff hist +18 Using the Diagram View
- 13:33, 2 October 2023 diff hist +1,099 Using the Diagram View
- 13:25, 2 October 2023 diff hist +302 N Using the Diagram View Created page with "This page contains tips, tricks, and some details on how to use the diagram view in ProcessDB. This only works for ProcessDB releases based on yFiles, not releases based on TS..."
- 07:05, 24 May 2023 diff hist +2,009 History current
- 06:50, 24 May 2023 diff hist +3 History
- 06:49, 24 May 2023 diff hist +4 History
- 06:49, 24 May 2023 diff hist +41 History
- 06:46, 24 May 2023 diff hist +80 N File:2023-05-24 - model history.png A model diagram with the history pane open and a list of versions. current
- 06:45, 24 May 2023 diff hist +948 N History Created page with "ProcessDB keeps a history of user data. The purpose of this history is to preserve user data such that valuable work is never lost. For example, if you work hard on creating a..."
- 12:34, 13 April 2023 diff hist +1 Experimental Protocols current
- 12:33, 13 April 2023 diff hist +6 Experimental Protocols
- 12:30, 13 April 2023 diff hist +11 Experimental Protocols
- 12:29, 13 April 2023 diff hist +98 N File:Experimental Protocols.png An example of the user interface showing an experiment and an experimental protocol. current
- 12:27, 13 April 2023 diff hist +200 Experimental Protocols
- 12:24, 13 April 2023 diff hist +646 Experimental Protocols
- 12:18, 13 April 2023 diff hist +89 N Experimental Protocols Created page with "This page gives an outline and overview of the user interface for experimental protocols."
- 12:18, 13 April 2023 diff hist +36 N Experimental Protocol Redirected page to Experimental Protocols current Tag: New redirect
- 12:15, 13 April 2023 diff hist +104 Step 3 →Record Your Experimental Protocols current
- 12:00, 13 April 2023 diff hist -5 Step 5 →Run Your Protocols on the Model current
- 07:32, 27 April 2022 diff hist +506 State Mask current
- 07:21, 27 April 2022 diff hist +939 N State Mask Created page with "The State Mask is used to hide some States in the Diagram View. The user selects which States to be hidden using the Mask State context menu in the Model Tree Vi..."
- 09:42, 8 February 2022 diff hist +12 SBML Import current
- 09:41, 8 February 2022 diff hist +3 SBML Import
- 09:41, 8 February 2022 diff hist -1 SBML Import
- 09:40, 8 February 2022 diff hist 0 SBML Import
- 09:40, 8 February 2022 diff hist +482 SBML Import
- 08:17, 8 February 2022 diff hist +165 SBML Import
- 08:15, 8 February 2022 diff hist +810 N SBML Import Created page with "The following operations and functions are supported on SBML import. The list is incomplete. There are some operations supported that are not included in this list, but if the..."
- 08:09, 8 February 2022 diff hist -3 Mathematical Expressions →Supported Symbolic Operators and Functions current
- 08:08, 8 February 2022 diff hist -1 Mathematical Expressions →Supported Symbolic Operators and Functions
- 08:07, 8 February 2022 diff hist +3 Mathematical Expressions →Supported Symbolic Operators and Functions
- 08:06, 8 February 2022 diff hist +86 Mathematical Expressions →Supported Symbolic Operators and Functions
- 08:04, 8 February 2022 diff hist 0 Simulator current
- 08:04, 8 February 2022 diff hist +25 Simulator
- 08:03, 8 February 2022 diff hist +4 Simulator
- 06:59, 3 February 2022 diff hist +170 Mathematical Expressions →Discrete Events
- 06:57, 3 February 2022 diff hist +36 Mathematical Expressions →Discrete Events
- 06:56, 3 February 2022 diff hist +699 Mathematical Expressions
- 06:34, 3 February 2022 diff hist +246 Mathematical Expressions
- 06:31, 3 February 2022 diff hist +852 Mathematical Expressions
- 06:18, 3 February 2022 diff hist +48 Mathematical Expressions →Supported Symbolic Operators
- 06:15, 3 February 2022 diff hist +18 Mathematical Expressions →Supported Symbolic Operators
- 06:14, 3 February 2022 diff hist +96 Mathematical Expressions →Supported Symbolic Operators
- 06:09, 3 February 2022 diff hist +302 N Mathematical Expressions Created page with "ProcessDB supports the mathematical operations described on this page which include symbolic operators as well as discrete events (which may create discontinuities in variable..."
- 11:29, 23 January 2022 diff hist -2 Selected Graphs current
- 11:29, 23 January 2022 diff hist -1 Cursor Graphs current
- 11:29, 23 January 2022 diff hist +2 Selected Graphs
- 11:27, 23 January 2022 diff hist +500 N Selected Graphs Created page with "[Categories:Reference Manual] Selected Graphs displays automatically generated graphs for selected states, processes, and experiments. (As of the time of this writing, selecte..."
- 10:51, 23 January 2022 diff hist +699 N Cursor Graphs Created page with "Category:Reference Manual Cursor Graphs are automatically created for each selected state and process when the "Cursor" button is toggled on in a New Graph Window. =..."
- 08:52, 21 January 2022 diff hist +173 Main Page current
- 08:50, 21 January 2022 diff hist +16 Main Page
- 08:50, 21 January 2022 diff hist +346 Main Page
- 18:14, 14 January 2022 diff hist +1 Find Potent Parameters current
- 18:14, 14 January 2022 diff hist -1 Find Potent Parameters
- 18:14, 14 January 2022 diff hist +1 Find Potent Parameters
- 18:12, 14 January 2022 diff hist +955 Find Potent Parameters
- 18:05, 14 January 2022 diff hist +52 Find Potent Parameters →Zero Potency
- 18:03, 14 January 2022 diff hist +871 Find Potent Parameters →Zero Potency
- 17:58, 14 January 2022 diff hist +878 Find Potent Parameters
- 17:41, 14 January 2022 diff hist +5 Find Potent Parameters
- 17:40, 14 January 2022 diff hist +203 Find Potent Parameters
- 17:25, 14 January 2022 diff hist +45 Find Potent Parameters
- 15:18, 14 January 2022 diff hist +31 Find Potent Parameters
- 15:17, 14 January 2022 diff hist +124 Find Potent Parameters
- 14:53, 14 January 2022 diff hist +261 N Find Potent Parameters Created page with "The Find Potent Parameters feature varies each parameter independently, runs a simulation, and calculates the objective function for that simulation. The simulations are all s..."
- 14:35, 10 January 2022 diff hist +1,171 Optimizer current
- 14:23, 10 January 2022 diff hist +65 Category:Reference current
- 14:21, 10 January 2022 diff hist +39 N Category:Reference Manual ProcessDB Reference Manual current
- 14:20, 10 January 2022 diff hist -253 Category:Reference Blanked the page Tag: Blanking
- 14:20, 10 January 2022 diff hist +7 Reference Manual current
- 14:19, 10 January 2022 diff hist +7 ProcessDB Reference Manual current
- 10:26, 10 January 2022 diff hist +253 N Category:Reference ProcessDB Reference Manual
- 10:23, 10 January 2022 diff hist +23 Reference Manual
- 10:23, 10 January 2022 diff hist +23 ProcessDB Reference Manual
- 08:22, 30 June 2021 diff hist +75 Milestones in the modeling process →Everyone agrees on the units of time, the units of quantity, and the basis of the model current
- 07:27, 18 June 2021 diff hist +24 Summary of ProcessDB features and philosophy →The Simulator
- 07:23, 18 June 2021 diff hist +1,358 Summary of ProcessDB features and philosophy →The Simulator
- 12:21, 8 October 2020 diff hist +278 Builtin Functions current
- 12:19, 8 October 2020 diff hist +565 N Builtin Functions Created page with "These are the functions builtin to ProcessDB that may be used in rate laws, MR functions, MOE functions, and other places where an expression is accepted. This list is incompl..."
- 14:34, 8 April 2019 diff hist +546 User Symbols current
- 14:27, 8 April 2019 diff hist -2 User Symbols
- 14:27, 8 April 2019 diff hist +11 User Symbols
- 14:27, 8 April 2019 diff hist +1,491 N User Symbols Created page with "User Symbols are a way for users to give a state or process a meaningful name that can be used in equations. This is different from a state name or process name. Symbols are c..."
- 11:21, 3 December 2018 diff hist +308 ProcessDB Reference Manual
- 11:12, 3 December 2018 diff hist -1 ProcessDB Reference Manual →Residuals tab
- 11:11, 3 December 2018 diff hist +1 ProcessDB Reference Manual →Residuals tab
- 11:11, 3 December 2018 diff hist -1 ProcessDB Reference Manual →Residuals tab
- 11:11, 3 December 2018 diff hist +368 ProcessDB Reference Manual →Residuals tab
- 11:09, 3 December 2018 diff hist +310 ProcessDB Reference Manual →All Residuals
- 11:03, 3 December 2018 diff hist +279 Optimizer
- 11:01, 3 December 2018 diff hist -260 Optimizer Blanked the page
- 10:59, 3 December 2018 diff hist +260 N Optimizer Created page with "The ProcessDB Optimizer is a suite of numerical optimization algorithms setup with an objective function to minimize the distance between model simulations and experimental da..."
- 08:39, 11 November 2015 diff hist +176 Features List Page →A Detailed Listing Of ProcessDB Features
- 08:39, 11 November 2015 diff hist +81 Simulator →Performance
- 08:38, 11 November 2015 diff hist +542 Simulator
- 08:32, 11 November 2015 diff hist +85 N Talk:Features List Page Created page with "What order should these features be in? Currently they seem to be arbitrarily listed." current
- 08:31, 11 November 2015 diff hist +6 Features List Page →A Detailed Listing Of ProcessDB Features
- 08:28, 11 November 2015 diff hist +23 Main Page →Introduction
- 08:22, 11 November 2015 diff hist +807 Glossary of ProcessDB terminology
- 08:07, 11 November 2015 diff hist -7 Step 6 →Test Your Hypothesis Against Your Data current
- 07:46, 31 October 2015 diff hist +35 Simulator →Choosing the Relative Tolerance
- 12:39, 29 October 2015 diff hist +14 Features List Page
- 12:39, 29 October 2015 diff hist +7 Step 6
- 12:36, 29 October 2015 diff hist +983 Simulator →Choosing the Relative Tolerance
- 12:27, 29 October 2015 diff hist +228 Simulator
- 12:25, 29 October 2015 diff hist +81 Simulator →Choosing the Absolute Tolerance
- 12:22, 29 October 2015 diff hist +3,411 Simulator →Choosing Tolerances
- 11:59, 29 October 2015 diff hist +12 Simulator →Negative Numbers
- 11:51, 29 October 2015 diff hist +34 ProcessDB Reference Manual →Absolute Tolerance
- 11:51, 29 October 2015 diff hist +34 ProcessDB Reference Manual →Relative Tolerance
- 11:50, 29 October 2015 diff hist +143 ProcessDB Reference Manual →Relative Tolerance:
- 11:49, 29 October 2015 diff hist +126 ProcessDB Reference Manual →Absolute Tolerance
- 11:47, 29 October 2015 diff hist +1,041 Simulator
- 11:36, 29 October 2015 diff hist +4 Simulator
- 11:35, 29 October 2015 diff hist +18 Simulator →Negative Numbers
- 11:33, 29 October 2015 diff hist +28 Simulator
- 11:27, 29 October 2015 diff hist +1,948 N Simulator Created page with "The ProcessDB simulator is custom designed for the types of models typically seen in biological modeling. This custom design includes necessary features for biological modelin..."
- 11:08, 29 October 2015 diff hist +54 Main Page
- 13:11, 25 June 2015 diff hist +1,048 ProcessDB Reference Manual →Residuals tab
- 13:08, 25 June 2015 diff hist +231 ProcessDB Reference Manual →Residuals tab
- 12:53, 25 June 2015 diff hist +1,564 ProcessDB Reference Manual →Residuals tab
- 12:36, 25 June 2015 diff hist +249 ProcessDB Reference Manual →Residuals tab
- 10:14, 25 June 2015 diff hist -50 ProcessDB Reference Manual →Residuals tab
- 10:10, 25 June 2015 diff hist +54 ProcessDB Reference Manual →Residuals tab
- 10:08, 25 June 2015 diff hist +468 ProcessDB Reference Manual →Residuals tab
- 09:58, 25 June 2015 diff hist +34 Main Page →ProcessDB Reference Manual
- 09:53, 25 June 2015 diff hist -32 Main Page →ProcessDB Reference Manual
- 09:45, 25 June 2015 diff hist +32 Main Page