Difference between revisions of "ProcessDB Reference Manual"
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== Display == | == Display == | ||
'''Display''' is the name of a drop down menu (located just below the list of Models in the Models tab of the main ProcessDB window) that allows you to select which models will be ''displayed'' in your Models tab. The choices are '''My Models''', '''Shared''', or '''Public'''. '''My models''' displays the names of all models owned by you. These are typically models that you created yourself, but have not made public. '''Shared''' displays models created and owned by other ProcessDB users, but shared with you. The owner must explicitly share such a model with you in order for it to appear in your Shared model display. You have complete authority over any model that has been shared with you, with the exception that you cannot delete it. '''Public''' displays models that have been shared with all ProcessDB users. Some Public models are examples used in ProcessDB Workshops; others are published models. There are no restrictions. Any ProcessDB user can make any of their models Public. You can run and Public model as is, but if you wish to modify it you must make a copy of your own. | '''Display''' is the name of a drop down menu (located just below the list of Models in the Models tab of the main ProcessDB window) that allows you to select which models will be ''displayed'' in your Models tab. The choices are '''My Models''', '''Shared''', or '''Public'''. '''My models''' displays the names of all models owned by you. These are typically models that you created yourself, but have not made public. '''Shared''' displays models created and owned by other ProcessDB users, but shared with you. The owner must explicitly share such a model with you in order for it to appear in your Shared model display. You have complete authority over any model that has been shared with you, with the exception that you cannot delete it. '''Public''' displays models that have been shared with all ProcessDB users. Some Public models are examples used in ProcessDB Workshops; others are published models. There are no restrictions. Any ProcessDB user can make any of their models Public. You can run and Public model as is, but if you wish to modify it you must make a copy of your own. | ||
| − | + | == Experiments tab == | |
== Initial OFV == | == Initial OFV == | ||
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== Max Iter == | == Max Iter == | ||
| + | == Molecules and Complexes tab == | ||
== Num Failed OF Evals == | == Num Failed OF Evals == | ||
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== OFV Tol == | == OFV Tol == | ||
== Parameters tab == | == Parameters tab == | ||
| + | == Places tab == | ||
| + | == Processes tab == | ||
== Residuals tab == | == Residuals tab == | ||
| + | == Show Models == | ||
| + | '''Show Models''' appears as an option on three different context menus. If you select Show Models from the context menu for a molecule or complex, ProcessDB will find every model that includes that molecule or complex. If such models are found, an expansion plus sign will appear next to the molecule icon ([[File:Expansion_plus_sign_for_molecule.png]]). Click the plus sign to display the list of models. Double click any model in the list to Load it into the diagram pane. Show Models works the same way when selected from the context menu for a Process in the Processes tab or for a Place in the Places tab. | ||
== Simulations tab == | == Simulations tab == | ||
Revision as of 10:19, 5 June 2015
If you want more information about any ProcessDB tool or label, look it up here alphabetically.
Additional Output tab
Algorithm
All Parameters
All Residuals
Best OFV
Display
Display is the name of a drop down menu (located just below the list of Models in the Models tab of the main ProcessDB window) that allows you to select which models will be displayed in your Models tab. The choices are My Models, Shared, or Public. My models displays the names of all models owned by you. These are typically models that you created yourself, but have not made public. Shared displays models created and owned by other ProcessDB users, but shared with you. The owner must explicitly share such a model with you in order for it to appear in your Shared model display. You have complete authority over any model that has been shared with you, with the exception that you cannot delete it. Public displays models that have been shared with all ProcessDB users. Some Public models are examples used in ProcessDB Workshops; others are published models. There are no restrictions. Any ProcessDB user can make any of their models Public. You can run and Public model as is, but if you wish to modify it you must make a copy of your own.
Experiments tab
Initial OFV
Iteration
Keep Best Parameters
Marquee Zoom
Marque Zoom is a tool on the Diagram Pane Toolbar. Its icon is 
. Click this icon to activate marquee zoom, which allows you to drag a rectangle over a region of interest in a diagram and zoom in to see the details in that region.
Max Iter
Molecules and Complexes tab
Num Failed OF Evals
Num OF Evals
Num Parameters
OFV Tol
Parameters tab
Places tab
Processes tab
Residuals tab
Show Models
Show Models appears as an option on three different context menus. If you select Show Models from the context menu for a molecule or complex, ProcessDB will find every model that includes that molecule or complex. If such models are found, an expansion plus sign will appear next to the molecule icon (
). Click the plus sign to display the list of models. Double click any model in the list to Load it into the diagram pane. Show Models works the same way when selected from the context menu for a Process in the Processes tab or for a Place in the Places tab.